2014  D. Osca, J. Templado, And R. Zardoya (2014) The mitochondrial genome of Ifremeria nautilei and the phylogenetic position of the enigmatic deep-sea Abyssochrysoidea (Mollusca: Gastropoda) Gene 547: 257-266  pdf  D. San Mauro, D.J. Gower, H. Muller, S.P. Loader, R. Zardoya, R.A. Nussbaum, And M. Wilkinson (2014) Life-history evolution and mitogenomic phylogeny of caecilian amphibians Molecular Phylogenetics and Evolution 73: 177-189  pdf  F. Abascal, I. Irisarri And R. Zardoya (2014) Diversity and evolution of membrane intrinsic proteins Biochimica et Biophysica Acta (BBA)-General Subjects 1840: 1468-1481  pdf  2013  A. Agorreta, D. San Mauro, U. Schliewen, J.L. Van Tassell, M. Kovacic, R. Zardoya And L. Ruber (2013) Molecular phylogenetics of Gobioidei and phylogenetic placement of European gobies Molecular Phylogenetics and Evolution 69: 619-633  pdf  O. Rican, L. Pialek, R.Zardoya, I. Doadrio, And J. Zrzavy (2013) Biogeography of the Mesoamerican Cichlidae (Teleostei: Heroini): colonization through the GAARlandia land bridge and early diversification Journal of Biogeography 40: 579-593  pdf  E.G. Gonzalez, And R. Zardoya (2013) Microsatellite DNA Capture from Enriched Libraries Microsatellite. Humana Press  pdf  F. Abascal And R. Zardoya (2013) Evolutionary analyses of gap junction protein families Biochimica et Biophysica Acta (BBA)-Biomembranes 1828: 4-14  pdf  2012  D. San Mauro, D.J. Gower, J.A. Cotton, R. Zardoya, M. Wilkinson, And T. Massingham (2012) Experimental design in phylogenetics: testing predictions from expected information Systematic Biology 61: 661-674  pdf  P.S. Fitze, V. Gonzalez-Jimena, L.M. San-Jose, D. San Mauro, And R. Zardoya (2012) A new species of sand racer, Psammodromus (Squamata: Lacertidae), from the Western Iberian Peninsula Zootaxa 3205: 41-52  pdf  I. Irisarri, D. San Mauro, F. Abascal, A. Ohler, M. Vences, And R. Zardoya (2012) The origin of modern frogs (Neobatrachia) was accompanied by acceleration in mitochondrial and nuclear substitution rates BMC Genomics 13: 626  pdf  F. Abascal, D. Posada And R. Zardoya (2012) The evolution of the mitochondrial genetic code in arthropods revisited Mitochondrial DNA 23: 84-91  pdf  F. Abascal And R. Zardoya (2012) LRRC8 proteins share a common ancestor with pannexins, and may form hexameric channels involved in cell‐cell communication BioEssays 34: 551-560  pdf  2011  M.T. Cabria, J.R. Michaux, B.J. Gómez-Moliner, D. Skumatov, T. Maran, P. Fournier, J.L. De Luzuriaga, And R. Zardoya (2011) Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius) Molecular Ecology 20: 176-190  pdf  I. Irisarri, M. Vences, D. San Mauro, F. Glaw, And R. Zardoya (2011) Reversal to air-driven sound production revealed by a molecular phylogeny of tongueless frogs, family Pipidae BMC Evolutionary Biology 11: 114  pdf  P.S. Fitze, V. Gonzalez-Jimena, L.M. San-Jose, D. San Mauro, P. Aragon, T. Suarez, And R. Zardoya (2011) Integrative analyses of speciation and divergence in Psammodromus hispanicus (Squamata: Lacertidae) BMC Evolutionary Biology 11: 347  pdf  R.L. Cunha, J.R. Verdú, J.M. Lobo, And R. Zardoya (2011) Ancient origin of endemic Iberian earth-boring dung beetles (Geotrupidae) Molecular Phylogenetics and Evolution 59: 578-586  pdf  2010  T. Yahara, M. Donoghue, R. Zardoya, D.P. Faith And J. Cracraft (2010) Genetic diversity assessments in the century of genome science Current Opinion in Environmental Sustainability 2: 43-49  pdf  I. Irisarri, D. San Mauro, D.M. Green And R. Zardoya (2010) The complete mitochondrial genome of the relict frog Leiopelma archeyi: Insights into the root of the frog Tree of Life Mitochondrial DNA 21: 173-182  pdf  F. Abascal, R. Zardoya, M.J. Telford (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations Nucleic Acids Res. 38 Suppl: W7-W13  pdf  A.P. Hendry, L.G. Lohmann, E. Conti, J. Cracraft, K.A. Crandall, D.P. Faith, C. Häuser, C.A. Joly, K. Kogure, A. Larigauderie, S. Magallón, C. Moritz, S. Tillier, R. Zardoya, A.H. Prieur-Richard, B.A. Walther, T. Yahara And M.J. Donoghue. (2010) Evolutionary biology in biodiversity science, conservation, and policy: a call to action Evolution 64:1517-1528  pdf  2009  E. Rial And R. Zardoya (2009) Oxidative stress, thermogenesis and evolution of uncoupling proteins J. Biol. 8:58  pdf  E.G. Gonzalez, M. Genovart, D. Oro, R. Zardoya And J. Juste (2009) Polymorphic microsatellite markers for the critically endangered Balearic shearwater, Puffinus mauretanicus Mol. Ecol. Res. 9: 1044-1046  pdf  D. San Mauro, D.J. Gower, T. Massingham, M. Wilkinson, R. Zardoya, And J. A. Cotton (2009) Experimental Design in Caecilian Systematics: Phylogenetic Information of Mitochondrial Genomes and Nuclear rag1 Syst. Biol. 58: 425-438  pdf  R. Cunha, C. Grande And R. Zardoya (2009) Neogastropod phylogenetic relationships based on entire mitochondrial genomes BMC Evol. Biol. 9:210  pdf  E. M. Albert. D. San Mauro, L. Ruber, M. García-París And R. Zardoya (2009) Effect of taxon sampling on recovering the phylogeny of squamate reptiles based on complete mitochondrial genome and nuclear gene sequence data Gene 441: 12-21  pdf  2008  O. Richan, R. Zardoya And I. Doadrio (2008) Phylogenetic relationships of Middle American cichlids (Cichlidae, Heroini) based on combined evidence from nuclear genes, mtDNA, and morphology Mol. Phylogenet. Evol. 49:951-957  pdf  E. G. González. P. Beerli And R. Zardoya (2008) Genetic structuring and migration patterns of Atlantic bigeye tuna (Thunnus obesus) BMC Evol. Biol. 8:252  pdf  C. Grande, J. Templado And R. Zardoya (2008) Evolution of gastropod mitochondrial genome arrangements BMC Evol. Biol. 8:61  pdf  C. Hernández-Sánchez, A. Mansilla, F. De Pablo And R. Zardoya (2008) Evolution of the insulin receptor family and of receptor isoform expression in vertebrates Mol. Biol. Evol. 25: 1043-1053  pdf  R. L. Cunha, M. J. Tenorio, C. Afonso, R. Castilho And R. Zardoya (2008) Replaying the tape: replicated evolutionary patterns in Cape Verde Conus Mol. Ecol. 17: 885-901  pdf  2007  M.T. Cabria, E. G. González, B. J. Gómez-Moliner And R. Zardoya (2007) Microsatellite markers for the endangered European mink (Mustela lutreola) and closely related mustelids Mol. Ecol. Notes. 7: 1185-1188  pdf  E. G. González And R. Zardoya (2007) Relative role of life-history traits and historical factors in shaping genetic population structure of sardines (Sardina pilchardus) BMC Evol. Biol. 7: 197- 209  pdf  C. Papetti, P. Lio, L. Rüber, P. Martínez, T. Patarnello And R. Zardoya (2007) Antarctic fish mitochondrial genomes lack ND6 gene J. Mol. Evol. 65: 519-528  pdf  E. Albert, R. Zardoya And M. García París (2007) Phylogeographic and speciation patterns in subterranean worm lizards of the genus Blanus (Amphisbaenia: Blanidae) Mol. Ecol. 16: 1519-1531  pdf  E. G. González And R. Zardoya (2007) Isolation and characterization of polymorphic microsatellites for the sardine, Sardina pilchardus (Clupeiformes: Clupeidae) Mol. Ecol. Notes 7: 519-521  pdf  F. Abascal, D. Posada Y R. Zardoya (2007) MtArt: a new model of amino acid replacement for Arthropoda Mol. Biol. Evol. 24: 1-5  pdf  G. A. Concheiro, O. Rican, G. Orti, E. Bermingham, I. Doadrio And R. Zardoya (2007) Phylogeny and biogeography of 91 species of heroine cichlids (Teleostei: Cichlidae) based on sequences of the cytochrome b gene Mol. Phylogenet. Evol. 43: 91-110   A. Jondeung, P. Sangthong And R. Zardoya (2007) The complete mitochondrial DNA sequence of the Mekong giant catfish (Pangasianodon gigas), and the phylogenetic relationships among Siluriformes Gene. 387: 49-57  pdf  2006  A. Manteca, A. I. Pelaez, R. Zardoya Y J. Sánchez (2006) Actinobacteria cyclophilins: phylogenetic relationships and description of new class- and order-specific paralogs J. Mol. Evol. 63:719-732  pdf  J. Jiménez-Jiménez, R. Zardoya, A. Ledesma, M. García De Lacoba, P. Zaragoza, M. M. González-Barroso And E. Rial (2006) Evolutionary Distinct Residues in the Uncoupling Protein UCP1 are Essential for its Characteristic Basal Proton Conductance J. Mol. Biol. 359: 1010-1022  pdf  F. Abascal, R. Zardoya Y D. Posada (2006) GenDecoder: genetic code prediction for metazoan mitochondria Nucleic Acids Res. 34: W389-W393  pdf  F. Abascal, D. Posada, R. Knight And R. Zardoya (2006) Parallel evolution of the mitochondrial genetic code in insects PLoS Biology. 4: 711-718   M.T. Cabría, J. Rubines, B. Gómez-Moliner And R. Zardoya (2006) On the phylogenetic position of a rare Iberian endemic mammal, the Pyrenean desman (Galemys pyrenaicus) Gene. 375: 1-13  pdf  L. Rüber, R. Britz Y R. Zardoya (2006) Molecular phylogenetics and evolutionary diversification of labyrinth fishes (Perciformes; Anabantoidei) Syst. Biol. 55: 374-397   D. San Mauro, D.J. Gower, R. Zardoya And M. Wilkinson (2006) A hotspot of gene rearrangement by tandem duplication and random loss in the vertebrate mitochondrial genome Mol. Biol. Evol. 23: 227- 234  pdf  T. Atarhouch, L. Rüber, E. G. González, E. Albert, M. Rami, A. Dakkak, And R. Zardoya (2006) Signature of an early genetic bottleneck in a population of Moroccan sardines (Sardina pilchardus) Mol. Phylogenet. Evol. 39: 373-383  pdf  C. Gissi, D. San Mauro, G. Pesole And R. Zardoya (2006) Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters Gene 366: 228-237  pdf  P. Martínez, E. G. González, R. Castilho And R. Zardoya (2006) Genetic diversity and historical demography of Atlantic bigeye tuna (Thunnus obesus) Mol. Phylogenet. Evol. 39: 404-416  pdf  2005  R. Zardoya (2005) Phylogeny and evolution of the Major Intrinsic Protein family Biol. Cell. 97: 397-414  pdf  R. L. Cunha, R. Castilho, L. Rüber, And R. Zardoya (2005) Patterns of cladogenesis in the venomous marine gastropod genus Conus from the Cape Verde Islands Systematic Biology. 54: 634-650   F. Abascal, R. Zardoya And D. Posada (2005) ProtTest: Selection of best-fit models of protein evolution Bioinformatics. 21: 2104-2105  pdf  L. Rüber And R. Zardoya (2005) Rapid cladogenesis in marine fishes revisited Evolution. 59: 1119-1127  pdf  E. Guacimara González, A. M. Castilla And R. Zardoya (2005) Novel polymorphic microsatellites for the red-legged partridge (Alectoris rufa) and cross-species amplification in Alectoris graeca Molecular Ecology Primer Notes. 5: 449-451  pdf  D. San Mauro, M. Vences, M. Alcobendas, R. Zardoya and A. Meyer (2005) Initial Diversification of Living Amphibians Predated the Breakup of Pangaea. The American naturalists 165: 590-599  pdf  2004  D. San Mauro, D. J. Gowerb, O. V. Oommenc, M. Wilkinsonb and R. Zardoyaa (2004) Phylogeny of caecilian amphibians (Gymnophiona) based on complete mitochondrial genomes and nuclear RAG1. Molecular Phylogenetics and Evolution 33: 413-427  pdf  D. San Mauro, M. García-Pariacute;s, R. Zardoya (2004) Phylogenetic relationships of discoglossid frogs (Amphibia:Anura:Discoglossidae) based on complete mitochondrial genomes and nuclear genes. Gene 343: 357-366  pdf  F.J. Cabrero-Sañudo and R. Zardoya (2004) Phylogenetic relationships of Iberian Aphodiini (Coleoptera: Scarabaeidae) based on morphological and molecular data. Molecular Phylogenetics and Evolution 31: 1084-1100  pdf  L. Rüber, R. Britz, S. O. Kullander And R. Zardoya (2004) Evolutionary and biogeographical patterns of the badidae (teleostei: Perciformes) inferred from mitochondrial and nuclear DNA sequence data. Molecular Phylogenetics and Evolution 32: 1010-1022  pdf  R. Zardoya, R. Castilho, C. Grande, L. Favre-Krey, S. Caetano, S. Marcato, G. Krey, T. Patarnello (2004) Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chub mackerel (Scomber japonicus), in the Mediterranean. Molecular Ecology 13: 1785-1798.pdf  C. Grande, J. Templado, J.L. Cervera and R. Zardoya (2004) Phylogenetic relationships among Opisthobranchia (Mollusca: Gastropoda) based on mitochondrial cox1 and rrnL genes. Mol. Phyl. Evol. 33: 378-388.pdf  L. Rüber, R. Britz, H.H. Tan, P.K.L. Ng and R. Zardoya (2004) Evolution of mouthbrooding and life-history correlates in the fighting fish genus Betta. Evolution 58: 798-813. pdf  C. Grande, J. Templado, J.L. Cervera and R. Zardoya (2004) Molecular phylogeny of Euthyneura (Mollusca: Gastropoda). Mol. Biol. Evol. 21: 303-313.pdf  2003   L. Rüber, J. L. Van Tassel and R. Zardoya (2003) Rapid speciation and ecological divergence in the American seven-spinned gobies (Gobiidae, Gobiosomatini) inferred from a molecular phylogeny. Evolution 57: 1584-1598. pdf   R. Zardoya and A. Meyer (2003) Molecular evidence on the origin of and the phylogenetic relationships among the major groups of vertebrates. Ch. 18 In: .pdf   A. Meyer and R. Zardoya (2003) Recent Advances in the (Molecular) Phylogeny of Vertebrates. Annual Review of Ecology and Systematics 34:311-338.pdf   R. Zardoya, E. Malaga, M. Veith and A. Meyer (2003) Complete nucleotide sequence of the mitochondrial genome of a salamander, Mertensiella luschani. Gene 317: 17-27. pdf   2002   R. Zardoya, X. Ding, Y. Kitagawa and M. J. Chrispeels (2002) Origin of plant glycerol transporters by horizontal gene transfer and functional shift. Proc. National Academy of Sciences USA 99: 14893-14896. pdf   S. Villalba, J.M. Lobo, F. Martín-Piera and R. Zardoya (2002) Phylogenetic relationships of Iberian dung beetles (Coleoptera: Scarabaeidae): insights on the evolution of nesting behaviour. Journal of Molecular Evolution 55: 116-126. pdf   C. Grande, J. Templado, J.L. Cervera and R. Zardoya (2002) The complete mitochondrial genome of the nudibranch Roboastra europaea (Mollusca: Gastropoda) supports the monophyly of opisthobranchs. Molecular biology and Evolution 19: 1672-1685. pdf   2001   R. Zardoya and S. Villalba (2001) A phylogenetic framework for the aquaporin family in Eukaryotes. Journal of Molecular Evolution 52: 391-404. pdf   R. Zardoya and A. Meyer (2001) The evolutionary position of turtles revised. Naturwissenschaften 88: 193-200.pdf   R. Zardoya and A. Meyer(2001) On the origin of and phylogenetic relationships among living Amphibians. Proc. Natu. Acad. Scien. 98: 7380-7383.pdf   2000   R. Zardoya and A. Meyer (2000) Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona). Genetics 155: 765-775. pdf   1999   R. Zardoya and I. Doadrio (1999) Molecular Evidence on the Evolutionary and Biogeographical Patterns of European CyprinidsJ. Mol. Evol. 49: 227-237. pdf   E. A. Braga, R. Zardoya , A. Meyer and J. Yen (1999) Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida). Marine Biology . 133: 79-90. pdf   R. Zardoya, Economidis, P.S. and I. Doadrio (1999) Phylogenetic relationships of Greek Cyprinidae: Molecular evidence for at least two independent origins of the Greek cyprinid fauna. Molecular Phylogenetics and Evolution 13: 122-131. Abstract   R. Zardoya, and I. Doadrio (1999) Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. Journal of Molecular Evolution 49: 227-237. pdf   1998   M. Veith, S. Steinfartz, R. Zardoya, A. Seitz, and A. Meyer (1998) A molecular phylogeny of "true" salamanders (family Salamandridae) and the evolution of terrestriality of reproductive modes. Journal of Zoological Systematics and Evolutionary research. 36: 7-16. Abstract   R. Zardoya, Y. Cao, M. Hasegawa, and A. Meyer (1998) Searching for the Closest Living Relative(s) of Tetrapods through evolutionary analyses of mitochondrial and nuclear data. Molecular Biology and Evolution 15: 506-517. pdf   I. Horovitz, R. Zardoya, and A. Meyer (1998) Platyrrhine systematics: a simultaneous analysis of molecular and morphological data. American Journal of Physical Anthropology 106: 261-281. pdf   T. Streelman, R. Zardoya, A. Meyer, and S. Karl (1998) Multilocus phylogeny of Cichlid fishes (Pisces: Perciformes): Evolutionary comparison of microsatellite and single-copy nuclear loci. Molecular Biology and Evolution 15: 798-808. pdf   R. Zardoya and I. Doadrio (1998) Phylogenetic relationships of Iberian cyprinids: Systematic and biogeographical implications. Proceedings of the Royal Society of London Series B. 265: 1365-1372. pdf   R. Zardoya and A. Meyer (1998) Cloning and characterization of a microsatellite in the mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa. Gene 216: 149-153. pdf   E. Abouheif, R. Zardoya and A. Meyer (1998) Limitations of Metazoan 18S rRNA Sequence data: Implications for reconstructing a phylogeny of the Animal kingdom and inferring the reality of the Cambrian explosion. Journal of Molecular Evolution 47: 394-405. pdf   R. Zardoya and A. Meyer (1998) Complete mitochondrial genome suggests diapsid affinities of turtles. Proceedings of the National Academy of Sciences USA 95: 14226-14231. pdf   1997   R. Zardoya and A. Meyer (1997) The complete DNA sequence of the mitochondrial genome of a “living fossil”, the coelacanth (Latimeria chalumnae). Genetics, 146: 995-1010. Abstract   R. Zardoya and A. Meyer (1997) Molecular phylogenetic information on the identity of the Closest Living Relative(s) of Land Vertebrates. Naturwissenschaften, 84: 389-397. pdf   1996   R. Zardoya and A. Meyer (1996) The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi), supports its phylogenetic position as a close relative of land vertebrates. Genetics 142: 1249-1263. Abstract   R. Zardoya and A. Meyer (1996) Evolutionary relationships of the coelacanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proceedings of the National Academy of Sciences USA. 93: 5449-5454. pdf   P.Suárez, R. Zardoya, M.J. Martín, C. Prieto, J. Dopazo, A. Solana and J.M. Castro (1996) Phylogenetic relationships of European strains of porcine reproductive and respiratory syndrome virus (PRRSv) inferred from DNA sequences of putative ORF-5 and ORF-7 genes. Virus Research 42: 159-165. Abstract   R. Zardoya and A. Meyer (1996) Phylogenetic performance of mitochondrial protein coding genes in resolving relationships among vertebrates. Molecular Biology and Evolution 13: 933-942. pdf   K. Noack, R. Zardoya and A. Meyer (1996) The complete mitochondrial DNA sequence of the Bichir (Polypterus ornatipinnis), a basal ray-finned fish: ancient establishment of the consensus vertebrate gene order. Genetics 144: 1165-1180. pdf   R. Zardoya, E. Abouheif and A. Meyer (1996) Evolutionary analyses of hedgehog and Hoxd-10 genes in fish species closely related to the zebrafish. Proceedings of the National Academy of Sciences USA 93: 13036-13041. pdf   R. Zardoya, E. Abouheif and A. Meyer (1996) Evolution and orthology of hedgehog genes. Trends in Genetics 12: 496-497. Abstract   R. Zardoya, D.M. Vollmer, C. Craddock, J.T. Streelman, S. Karl and A. Meyer. (1996) Evolutionary conservation of microsatellite flanking regions and their utility in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). Proceedings of the Royal Society of LondonSeries B 263:1611-1618. pdf   1995   R. Zardoya, A. Pérez-Martos, J.M. Bautista and J. Montoya. (1995) Analysis of the transcription products of the rainbow trout (Oncorynchus mykiss) liver mitochondrial genome: detection of novel mitochondrial transcripts. Current Genetics 28: 67-70. Abstract   R. Zardoya, M. Villalta, M. López-Pérez, A. Garrido-Pertierra, J. Montoya and J.M. Bautista (1995) Nucleotide sequence of the sheep mitochondrial DNA D-loop and its flanking tRNA genes. Current Genetics 28: 94-96.   R. Zardoya, E. Costas, V. López-Rodas, A. Garrido-Pertierra and J.M. Bautista (1995) Revised dinoflagellate phylogeny inferred from molecular analysis of large subunit ribosomal RNA gene sequences. Journal of Molecular Evolution 41: 637-645. Abstract   E. Costas, R. Zardoya, J.M. Bautista, A. Garrido-Pertierra and V. López-Rodas (1995) Morphospecies versus genospecies in toxic marine dinoflagellates: an analysis of G. catenatum/ G. impudicum and A. minutum/ A. lusitanicum using antibodies, lectins and gene sequences. Journal of Phycology 31: 801-807. Abstract   R. Zardoya, A. Garrido-Pertierra and J.M. Bautista (1995) The complete nucleotide sequence of the mitochondrial DNA of the Rainbow trout, Oncorhynchus mykiss. Journal of Molecular Evolution 41: 942-951. Abstract   N. Da Silva, R. Zardoya, G. Santurde, A. Solana and J.M. Castro (1995) Rapid and sensitive detection of the bovine viral diarrhea virus genome in semen. Journal of Virological Methods 55: 209-218. Abstract   1994   R. Zardoya, A. Diez, P.J. Mason, L. Luzzatto, A. Garrido and J.M. Bautista (1994) High Resolution of Proteins by Double-Inverted Gradient Polyacrylamide Gel Electrophoresis (DG-PAGE). BioTechniques 16: 271-276. Abstract   R. Zardoya, A. Diez, M.C. Serradilla, J.A. Madrid, J.M. Bautista and A. Garrido-Pertierra (1994) Lipogeneic activities in rat liver are subjected to circadian rhythms. Revista Española de Fisiología 50: 239-244. Abstract   P. Suárez, R. Zardoya, C. Prieto, A. Solana,E. Tabares, J.M. Bautista, and J.M. Castro (1994) Direct Detection on the Porcine Reproductive and Respiratory Syndrome (PRRS) Virus by Reverse Polymerase Chain Reaction (RT-PCR). Archives of Virology 135: 89-99.